OMIA 002200-9915 : Hyperpigmentation, ASIP-related in Bos indicus
|Symbol||Description||Species||Chr||Location||OMIA gene details page||Other Links|
|ASIP||Bos indicus||-||no genomic information (-..-)||ASIP||Ensembl|
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WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.
Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.
|OMIA Variant ID||Breed(s)||Variant Phenotype||Gene||Allele||Type of Variant||Source of Genetic Variant||Reference Sequence||Chr.||g. or m.||c. or n.||p.||Verbal Description||EVA ID||Inferred EVA rsID||Year Published||PubMed ID(s)||Acknowledgements|
|1321||Brahman Nellore||Darkness of hair coat||ASIP||delins, gross (>20)||Naturally occurring variant||13||1155-bp deletion followed by an insertion of a transposable element of more than 150 bp that may impact the recruitment of ASIP non-coding exons (Trigo et al.2021)||2021||33910501|
|2021||Trigo, B.B., Utsunomiya, A.T.H., Fortunato, A.A.A.D., Milanesi, M., Torrecilha, R.B.P., Lamb, H., Nguyen, L., Ross, E.M., Hayes, B., Padula, R.C.M., Sussai, T.S., Zavarez, L.B., Cipriano, R.S., Caminhas, M.M.T., Lopes, F.L., Pelle, C., Leeb, T., Bannasch, D., Bickhart, D., Smith, T.P.L., Sonstegard, T.S., Garcia, J.F., Utsunomiya, Y.T. :|
|Variants at the ASIP locus contribute to coat color darkening in Nellore cattle. Genet Sel Evol 53:40, 2021. Pubmed reference: 33910501. DOI: 10.1186/s12711-021-00633-2.|
- Created by Imke Tammen2 on 17 Jun 2021