OMIA 002541-9685 : Chondrodysplasia, UGDH-related in Felis catus
Buckley et al. (2020): "No individuals homozygous for the SV were observed and genotypes were not in Hardy-Weinberg equilibrium (X2 = 23.4, p-value < 0.001). Moreover, out of 11 individuals with two heterozygous affected parents, 7 cats were heterozygous for the SV and 4 cats were homozygous reference, which is consistent with the expected ratio of genotypes for a recessive lethal allele."Molecular basis: Struck et al. (2020): "Structural variant analysis with LUMPY software revealed one variant on FCA B1 harbouring a heterozygous deletion of 3303 bp in all three standard Munchkin cats but homozygous wild type in the non-standard Munchkin kitten and all 16 controls. The 3303 bp deletion was located within UDP-glucose 6-dehydrogenase (UGDH) at 173,294,289-173,297,592 bp (Felis catus 8.0; NC_018726.2:g.173294289_173297592delins108), equivalent to 174,882,895-174,886,198 bp (Felis catus 9.0; NC_018726.3:g.174882895_174886198delins108) on FCA B1 within the critical region. This 3303 bp deletion comprises 1191 bp of intronic sequences (intron 10–11, ENSFCAT00000009602.6 or intron 9–10, ENSFCAT00000055794.2), exon 11 (ENSFCAT00000009602.6) or 10 (ENSFCAT00000055794.2) and 2001 bp of the 3′-UTR. . . . Sanger cDNA sequencing confirmed the break points of the deletion predicted in the LUMPY software. Furthermore, an insert of 108 bp was identified between the break points of the deletion in all three standard Munchkin cats".
Buckley et al. (2020) independently discovered what appears to be the same likely causal variant of the Munchkin phenotype: "a complex deletion coupled with a nearby potential duplication event that was shared privately across three unrelated cats with dwarfism and is found within a known dwarfism associated region on cat chromosome B1". More specifically, "a 3.3 kb deletion at position chrB1:174,882,897–174,886,198, overlapping the final exon of UDP-glucose 6-dehydrogenase (UGDH) (Fig 4B). Upon manual inspection of this SV, a 49 bp segment from exon 8 appeared to be duplicated and inserted 3.5 kb downstream, replacing the deleted sequence. This potentially duplicated segment was flanked by a 37 bp sequence at the 5`end and a 20 bp sequence at the 3’ end, both of unknown origin".Clinical features: Struck et al. (2020): "CT of the forelimbs of the 4-year old standard Munchkin tomcat showed a shortening of all distal und proximal long bones including humerus, radius, ulna and metacarpalia (Fig. 2 and Additional file 2). Lengths of the humerus, radius, ulna, metacarpalia, femur and tibia of the standard Munchkin cat were reduced by 71, 58, 64, 84, 74, and 70%, respectively, in comparison to the domestic cat. Metatarsalia had normal length. All bones of the front and hind limbs exhibited higher average diaphyseal diameters, in particular humerus (+ 14%) and femur (+ 29%). Furthermore, the humerus showed a slight internal rotation along its longitudinal axis, resulting in a moderate incongruity in the elbow joint with axial deviation. The humerus compacta in the middle segment revealed a moderate degree of thickening of 2.4 mm (0.09 in). Furthermore, the radius was too short in relation to the ulna, as well as the ulna was slightly medially rotated, whereas the radius was bent to a high degree in the longitudinal axis of about 43°. This resulted in an incongruity in the ulnocarpal and radiocarpal joint. The hind limbs did not show any rotation and structural effects." Prevalence: Buckley et al. (2020): "PCR-based genotyping of the 3.3 kb deletion breakpoints was conducted in a total of 109 cats including, 41 normal and 68 affected dwarf cats (S9 Fig). Expected amplicon sizes and phenotypes were concordant across all cats, except for a “Munchkin; non-standard (normal legs); Selkirk mix”, which appeared to carry the mutant allele, suggesting an alternate causal gene or sampling error (S8 Data)." Breed: Munchkin. Associated gene:
|Symbol||Description||Species||Chr||Location||OMIA gene details page||Other Links|
|UGDH||UDP-glucose 6-dehydrogenase||Felis catus||B1||NC_058371.1 (172141747..172173863)||UGDH||Homologene, Ensembl, NCBI gene|
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WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.
Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.
|OMIA Variant ID||Breed(s)||Variant Phenotype||Gene||Allele||Type of Variant||Source of Genetic Variant||Reference Sequence||Chr.||g. or m.||c. or n.||p.||Verbal Description||EVA ID||Inferred EVA rsID||Year Published||PubMed ID(s)||Acknowledgements|
|1228||Munchkin||Munchkin standard||UGDH||delins, gross (>20)||Naturally occurring variant||Felis_catus_9.0||B1||g.174882895_174886198delinsN||NC_018726.3:g.174882895_174886198delins108, Felis catus 9.0 (Struck et al., 2020)||2020||32605545|
Note: the references are listed in reverse chronological order (from the most recent year to the earliest year), and alphabetically by first author within a year.
|2021||Anderson, L.M., Fox, D.B., Chesney, K.L., Coates, J.R., Torres, B.T., Lyons, L.A. :|
|Skeletal manifestations of heritable disproportionate dwarfism in cats as determined by radiography and magnetic resonance imaging. Vet Comp Orthop Traumatol 34:327-337, 2021. Pubmed reference: 34082456. DOI: 10.1055/s-0041-1730355.|
|Rodney, A.R., Buckley, R.M., Fulton, R.S., Fronick, C., Richmond, T., Helps, C.R., Pantke, P., Trent, D.J., Vernau, K.M., Munday, J.S., Lewin, A.C., Middleton, R., Lyons, L.A., Warren, W.C. :|
|A domestic cat whole exome sequencing resource for trait discovery. Sci Rep 11:7159, 2021. Pubmed reference: 33785770. DOI: 10.1038/s41598-021-86200-7.|
|2020||Buckley, R.M., Davis, B.W., Brashear, W.A., Farias, F.H.G., Kuroki, K., Graves, T., Hillier, L.W., Kremitzki, M., Li, G., Middleton, R.P., Minx, P., Tomlinson, C., Lyons, L.A., Murphy, W.J., Warren, W.C. :|
|A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism. PLoS Genet 16:e1008926, 2020. Pubmed reference: 33090996. DOI: 10.1371/journal.pgen.1008926.|
|Lyons, L.A. :|
|Precision medicine in cats-The right biomedical model may not be the mouse! PLoS Genet 16:e1009177, 2020. Pubmed reference: 33290388. DOI: 10.1371/journal.pgen.1009177.|
|Struck, A.K., Braun, M., Detering, K.A., Dziallas, P., Neßler, J., Fehr, M., Metzger, J., Distl, O. :|
|A structural UGDH variant associated with standard Munchkin cats. BMC Genet 21:67, 2020. Pubmed reference: 32605545. DOI: 10.1186/s12863-020-00875-x.|
- Created by Imke Tammen2 on 22 Mar 2022
- Changed by Imke Tammen2 on 22 Mar 2022