OMIA:003028-9615 : Retinal atrophy, cone-rod dystrophy, SPATA7-related in Canis lupus familiaris (dog)

Categories: Vision / eye phene

Links to possible relevant human trait(s) and/or gene(s) in OMIM: 609868 (gene) , 604232 (trait)

Single-gene trait/disorder: yes

Mode of inheritance: Autosomal recessive

Disease-related: yes

Key variant known: yes

Year key variant first reported: 2025

Species-specific name: day blindness / retinal degeneration

Inheritance: Pedigree analysis supported an autosomal recessive mode of inheritance (Murgiano et al., 2025).

Molecular basis: Murgiano et al. (2025): "Through GWAS and homozygosity mapping, a large deletion on CFA8:NC_049229.1:g.60,022,583_60,040,453del was found which removes 3’ portions of two different genes, PTPN21 and SPATA7 ... ." The authors propose that the effect on the functional candidate gene SPATA7 is disease causing: "The variant leads to a deletion of the 3’-end of the SPATA7 transcript: XM_038545497.1:r.1,314_1,629delins[g.60,018,954–60,018,990], p.(XP_038401425.1: Asp361GlufsTer2), reducing the predicted protein from 595 to 361 AA."

Clinical features: Murgiano et al. (2025): "Affected dogs had severe vision deficits present at a young age, generally before 2–3 months of age, and characterized by very poor to absent vision under photopic conditions, but with no evidence of photophobia. ... Full-field electroretinography (ERG) was used for objective assessment of retinal function. .... cone ERG responses were absent as early as 7 weeks of age. We also found that as early as 15 weeks of age, rod responses were reduced by ~60–80% in dogs that showed no vascular attenuation or generalized hyperreflectivity ... . Over time, rod responses were further decreased and no longer recordable, and the ERG was considered ‘extinguished’."

Breed: Poodle, Standard (Dog) (VBO_0201056).
Breeds in which the phene or likely causal variants have been documented. If a likely causal variant has been documented, see variant-specific breed information in the variant table. (Breed information may be incomplete).

Associated gene:

Symbol Description Species Chr Location OMIA gene details page Other Links
SPATA7 spermatogenesis associated 7 Canis lupus familiaris 8 NC_051812.1 (59927670..59966727) SPATA7 Ensembl, NCBI gene

Variants

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WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.

Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.

OMIA Variant ID Breed(s) Variant Phenotype Gene Allele Variant Type Variant Effect Source of Genetic Variant Pathogenicity Classification* Reference Sequence Chr. g. or m. c. or n. p. Verbal Description EVA ID Year Published PubMed ID(s) Acknowledgements
1856 Poodle, Standard (Dog) Retinal atrophy, cone-rod dystrophy SPATA7 deletion, gross (>20) frameshift Naturally occurring variant Not currently evaluated UU_Cfam_GSD_1.0 8 NC_049229.1:g.60022583_60040453del XM_038545497.1:r.1,314_1,629delins[g.60018954–60018990] XP_038401425.1:p.(D361Efs*2) 2025 41325489

* Variant pathogenicity for single gene diseases as evaluated by an expert panel of the International Society of Animal Genetics (ISAG) Animal Genetic Testing Standardization Standing Committee

Clinical synopsis/links to phenotypes

Variant Phenotype(s) References (Pubmed ID)
1856 MP:0004022: abnormal cone electrophysiology
HP:0000512: Abnormal electroretinogram
MP:0004021: abnormal rod electrophysiology
MP:0002001: blindness
HP:0012047: Hemeralopia
HP:0000529: Progressive visual loss
41325489

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Cite this entry

Nicholas, F. W., Tammen, I., & Sydney Informatics Hub. (2025). OMIA:003028-9615: Online Mendelian Inheritance in Animals (OMIA) [dataset]. https://omia.org/. https://doi.org/10.25910/2AMR-PV70

Reference

2025 Murgiano, L., Niggel, J.K., Takahashi, K., Dufour, V.L., Grubaugh, C.R., Sudharsan, R., Kwok, J.C., Becker, D., Banerjee, E., Yu, W.M., Leeb, T., Qu, C.K., Beltran, W.A., Aguirre, G.D. :
Two genes, one culprit - a functional candidate validation of a SPATA7 deletion in dogs with day blindness/retinal degeneration. PLoS Genet 21:e1011961, 2025. Pubmed reference: 41325489. DOI: 10.1371/journal.pgen.1011961.

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  • Created by Imke Tammen2 on 03 Dec 2025
  • Changed by Imke Tammen2 on 03 Dec 2025