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Link to this search: https://omia.org/results/?gb_species_id=9627&result_type=variant&search_type=advanced
4 variant records found |
[show instead phene records] |
By default, variants are sorted chronologically by year of publication, to provide a historical perspective.
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WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.
Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.
OMIA Variant ID | OMIA Phene-Species ID(s) | Species Name | Breed(s) | Variant Phenotype | Gene | Allele | Type of Variant | Source of Genetic Variant | Deleterious? | Reference Sequence | Chr. | g. or m. | c. or n. | p. | Verbal Description | EVA ID | Year Published | PubMed ID(s) | Acknowledgements |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
667 | OMIA:000201-9627 | red fox | Dark Standard Silver | ASIP | deletion, gross (>20) | Naturally occurring variant | no | VulVul2.2 | NW_020356514.1 | A 16.5-kb deletion resulting in "a 166-nt deletion in the Standard Silver fox cDNA, spanning the second exon ... .This deletion removes the start codon and entire signal peptide" | 1997 | 9054949 | |||||||
1525 | OMIA:001652-9627 | red fox | Platinum coat colour | KIT | splicing | Naturally occurring variant | yes | G>A variant in the first nucleotide of KIT intron 17 causes skipping of exon 17 | 2015 | 25662789 | |||||||||
115 | OMIA:001199-9627 | red fox | Coat colour, extension | MC1R | E^A | missense | Naturally occurring variant | no | VulVul2.2 | NW_020356486.1 | g.6101019T>C | c.373T>C | p.(C125R) | XM_026005028.1; XP_025860813.1 | 1997 | 9054949 | |||
1118 | OMIA:000202-9627 | red fox | Albinism | TYR | insertion, small (<=20) | Naturally occurring variant | yes | VulVul2.2 | NW_020356544.1 | g.7130732dup | c.365dup | p.(N122Kfs4*) | XM_026015193.1; XP_025870978.1; published as c.365dupA | 2019 | 31246286 |
Overall Statistics | |
---|---|
Total number of variants | 4 |
Variants with genomic location | 3 (75.0% ) |
Variants in a variant database, i.e. with rs ID | 0 (0.0%) |
Variant Type | Count | Percent |
---|---|---|
deletion, gross (>20) | 1 | 25.0% |
insertion, small (<=20) | 1 | 25.0% |
missense | 1 | 25.0% |
splicing | 1 | 25.0% |
Year First Reported | Count | Percent |
---|---|---|
1997 | 2 | 50.0% |
1998 | 0 | 0.0% |
1999 | 0 | 0.0% |
2000 | 0 | 0.0% |
2001 | 0 | 0.0% |
2002 | 0 | 0.0% |
2003 | 0 | 0.0% |
2004 | 0 | 0.0% |
2005 | 0 | 0.0% |
2006 | 0 | 0.0% |
2007 | 0 | 0.0% |
2008 | 0 | 0.0% |
2009 | 0 | 0.0% |
2010 | 0 | 0.0% |
2011 | 0 | 0.0% |
2012 | 0 | 0.0% |
2013 | 0 | 0.0% |
2014 | 0 | 0.0% |
2015 | 1 | 25.0% |
2016 | 0 | 0.0% |
2017 | 0 | 0.0% |
2018 | 0 | 0.0% |
2019 | 1 | 25.0% |