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Link to this search: https://omia.org/results/?gb_species_id=9135&result_type=variant&search_type=advanced

4 variant records found

[show instead phene records]

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WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.

Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.

OMIA Variant ID OMIA Phene-Species ID(s) Species Name Breed(s) Variant Phenotype Gene Allele Type of Variant Source of Genetic Variant Deleterious? Reference Sequence Chr. g. or m. c. or n. p. Verbal Description EVA ID Inferred EVA rsID Year Published PubMed ID(s) Acknowledgements
1559 OMIA:002466-9135 common canary Beak and leg colour, red BCO2 missense Naturally occurring variant no NW_022042652.1 g.75258192G>A p.R413H 2020 31930402 XP_009096268.1, genomic position as reported by Bovo et al. (2023) PMID:37194440
1561 OMIA:001445-9135 common canary Feather colour, Opal / Mogno MLPH deletion, small (<=20) Naturally occurring variant no NW_022042652.1 g.66493407_66493413del p.(A237fs) XP_009086443.1 2023 37194440
1560 OMIA:001445-9135 common canary Feather colour, Onyx MLPH missense Naturally occurring variant no NW_022042652.1 g.66497548C>T p.(R111K) XM_009088195.3; XP_009086443.1 2023 37194440
1558 OMIA:001252-9135 common canary Feather colour, recessive white SCARB1 splicing Naturally occurring variant no NW_022042652.1 g.27474120A>C Variant in located in the splice-donor site immediately downstream of exon 4 and results in transcript isoforms. Genomic coordinates as listed by Bovo et al., 2023, PMID:37194440. 2017 28465440
Overall Statistics
Total number of variants 4
Variants with genomic location 4 (100.0% )
Variants in a variant database, i.e. with rs ID 0 (0.0%)
Variant Type Count Percent
deletion, small (<=20) 1 25.0%
missense 2 50.0%
splicing 1 25.0%
Year First Reported Count Percent
2017 1 25.0%
2018 0 0.0%
2019 0 0.0%
2020 1 25.0%
2021 0 0.0%
2022 0 0.0%
2023 2 50.0%