OMIA:002466-9135 : Beak colour, BCO2-related in Serinus canaria (common canary) |
In other species: woodpecker finch , large cactus finch , medium ground-finch , small ground finch , large ground finch , common cactus finch , sharp-beaked ground finch , small tree finch , large tree finch , medium tree finch , Cocos finch , mangrove finch , Española cactus finch & Genovesa ground finch
Categories: Pigmentation phene
Possibly relevant human trait(s) and/or gene(s) (MIM number): 611740 (gene)
Links to MONDO diseases: No links.
Mendelian trait/disorder: yes
Considered a defect: no
Key variant known: yes
Year key variant first reported: 2020
Cross-species summary: Bill colour, BCO2-related
Genetic engineering:
Unknown
Have human generated variants been created, e.g. through genetic engineering and gene editing
Associated gene:
| Symbol | Description | Species | Chr | Location | OMIA gene details page | Other Links |
|---|---|---|---|---|---|---|
| BCO2 | beta-carotene oxygenase 2 | Serinus canaria | 24 | NC_066337.1 (5969301..5984171) | BCO2 | Homologene, Ensembl , NCBI gene |
Variants
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WARNING! Inclusion of a variant in this table does not automatically mean that it should be used for DNA testing. Anyone contemplating the use of any of these variants for DNA testing should examine critically the relevant evidence (especially in breeds other than the breed in which the variant was first described). If it is decided to proceed, the location and orientation of the variant sequence should be checked very carefully.
Since October 2021, OMIA includes a semiautomated lift-over pipeline to facilitate updates of genomic positions to a recent reference genome position. These changes to genomic positions are not always reflected in the ‘acknowledgements’ or ‘verbal description’ fields in this table.
| OMIA Variant ID | Breed(s) | Variant Phenotype | Gene | Allele | Type of Variant | Source of Genetic Variant | Reference Sequence | Chr. | g. or m. | c. or n. | p. | Verbal Description | EVA ID | Inferred EVA rsID | Year Published | PubMed ID(s) | Acknowledgements |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1559 | Beak and leg colour, red | BCO2 | missense | Naturally occurring variant | NW_022042652.1 | g.75258192G>A | p.R413H | 2020 | 31930402 | XP_009096268.1, genomic position as reported by Bovo et al. (2023) PMID:37194440 |
Cite this entry
Nicholas, F. W., Tammen, I., & Sydney Informatics Hub. (2023). OMIA:002466-9135: Online Mendelian Inheritance in Animals (OMIA) [dataset]. https://omia.org/. https://doi.org/10.25910/2AMR-PV70
References
Note: the references are listed in reverse chronological order (from the most recent year to the earliest year), and alphabetically by first author within a year.
| 2023 | Bovo, S., Ribani, A., Utzeri, V.J., Taurisano, V., Bertarini, G., Fontanesi, L. : |
| Whole genome sequencing identifies candidate genes and mutations that can explain diluted and other colour varieties of domestic canaries (Serinus canaria). Anim Genet 54:510-525, 2023. Pubmed reference: 37194440. DOI: 10.1111/age.13331. | |
| 2020 | Gazda, M.A., Toomey, M.B., Araújo, P.M., Lopes, R.J., Afonso, S., Myers, C.A., Serres, K., Kiser, P.D., Hill, G.E., Corbo, J.C., Carneiro, M. : |
| Genetic basis of de novo ppearance of carotenoid ornamentation in bare parts of canaries. Mol Biol Evol 37:1317-1328, 2020. Pubmed reference: 31930402. DOI: 10.1093/molbev/msaa006. |
Edit History
- Created by Imke Tammen2 on 18 May 2023
- Changed by Imke Tammen2 on 18 May 2023